Behavioural experiments often happen in specialised arenas, but this may confound the analysis. To address this issue, we provide tools to study mice in the homecage environment, equipping biologists with the possibility to capture the temporal aspect of the individual's behaviour and model the interaction and interdependence between cage-mates with minimal human intervention. We develop the Activity Labelling Module (ALM) to automatically classify mouse behaviour from video, and a novel Group Behaviour Model (GBM) for summarising their joint behaviour across cages, using a permutation matrix to match the mouse identities in each cage to the model. We also release two datasets, ABODe for training behaviour classifiers and IMADGE for modelling behaviour.

Suppose we train an animal in a conditioning experiment. Can one predict how a given animal, under given experimental conditions, would perform the task? Since various factors such as stress, motivation, genetic background, and previous errors in task performance can influence animal behaviour, this appears to be a very challenging aim. Reinforcement learning (RL) models have been successful in modeling animal (and human) behaviour, but their success has been limited because of uncertainty as to how to set meta-parameters (such as learning rate, exploitation-exploration balance and future reward discount factor) that strongly influence model performance. We show that a simple RL model whose metaparameters are controlled by an artificial neural network, fed with inputs such as stress, affective phenotype, previous task performance, and even neuromodulatory manipulations, can successfully predict mouse behaviour in the "hole-box" - a simple conditioning task.

Suppose we train an animal in a conditioning experiment. Can one predict how a given animal, under given experimental conditions, would perform the task? Since various factors such as stress, motivation, genetic background, and previous errors in task performance can influence animal behaviour, this appears to be a very challenging aim. Reinforcement learning (RL) models have been successful in modeling animal (and human) behaviour, but their success has been limited because of uncertainty as to how to set meta-parameters (such as learning rate, exploitation-exploration balance and future reward discount factor) that strongly influence model performance. We show that a simple RL model whose metaparameters are controlled by an artificial neural network, fed with inputs such as stress, affective phenotype, previous task performance, and even neuromodulatory manipulations, can successfully predict mouse behaviour in the "hole-box" - a simple conditioning task. Our results also provide important insights on how stress and anxiety affect animal learning, performance accuracy, and discounting of future rewards, and on how noradrenergic systems can interact with these processes.

Suppose we train an animal in a conditioning experiment. Can one predict how a given animal, under given experimental conditions, would perform the task? Since various factors such as stress, motivation, genetic background, and previous errors in task performance can influence animal behaviour, this appears to be a very challenging aim. Reinforcement learning (RL) models have been successful in modeling animal (and human) behaviour, but their success has been limited because of uncertainty as to how to set meta-parameters (such as learning rate, exploitation-exploration balance and future reward discount factor) that strongly influence model performance. We show that a simple RL model whose metaparameters are controlled by an artificial neural network, fed with inputs such as stress, affective phenotype, previous task performance, and even neuromodulatory manipulations, can successfully predict mouse behaviour in the "hole-box" - a simple conditioning task. Our results also provide important insights on how stress and anxiety affect animal learning, performance accuracy, and discounting of future rewards, and on how noradrenergic systems can interact with these processes.

Suppose we train an animal in a conditioning experiment. Can one predict how a given animal, under given experimental conditions, would perform the task? Since various factors such as stress, motivation, genetic background, and previous errors in task performance can influence animal behaviour, this appears to be a very challenging aim. Reinforcement learning (RL) models have been successful inmodeling animal (and human) behaviour, but their success has been limited because of uncertainty as to how to set meta-parameters (such as learning rate, exploitation-exploration balance and future reward discount factor) that strongly influence model performance. We show that a simple RL model whose metaparameters arecontrolled by an artificial neural network, fed with inputs such as stress, affective phenotype, previous task performance, and even neuromodulatory manipulations,can successfully predict mouse behaviour in the "hole-box" - a simple conditioning task. Our results also provide important insights on how stress and anxiety affect animal learning, performance accuracy, and discounting of future rewards, and on how noradrenergic systems can interact with these processes.